Welcome to the documentation of singletCode!ΒΆ
singletCode (link to preprint) uses cell barcoding technology to identify true singlets in scRNAseq data. In our preprint, we used singletCode to benchmark existing doublet detection methods and train a classifier to detect singlets in non-barcoded datasets as well of the same cell type.
- doublets in sequencing
- what is singletCode?
- classifier
- implementing singletCode on your data
- benchmarking doublet detection methods
- dataset information
- singletCode PyPI package
- command line interface
- Vignette to use singletCode Command Line tool to analyse single-cell data with watermelon barcodes
- Vignette to use singletCode package
- questions? contact us!
- link to paper
- Goyal Lab website
- repositories