command line interface¶
Availablility¶
The source code for the command line tool is available in our GitHub repository ( repo). You can clone the reposiory to access the code locally.
git clone https://github.com/GoyalLab/singletCodeTools/
Using the interface¶
Navigating to commandLineTools folder, you will find 3 files and you will need to run singletCodeCommandLine.py. There are 2 modules available, one to run singletCode and the other to create a sample sheet if you have used Watermelon barcoding techmology using the fastq sequenced files from MISEQ.